epikit - Miscellaneous helper tools for epidemiologists

Contains tools for formatting inline code, renaming redundant columns, aggregating age categories, adding survey weights, finding the earliest date of an event, plotting z-curves, generating population counts and calculating proportions with confidence intervals. This is part of the 'R4Epis' project <https://r4epis.netlify.com>.

Last updated 2 years ago

6.33 score 9 stars 2 packages 22 scripts 1.2k downloads

epidict - Epidemiology data dictionaries and random data generators

The 'R4EPIs' project <https://R4epis.netlify.com> seeks to provide a set of standardized tools for analysis of outbreak and survey data in humanitarian aid settings. This package currently provides standardized data dictionaries from MSF OCA for four outbreak scenarios (Acute Jaundice Syndrome, Cholera, Measles, Meningitis) and three surveys (Retrospective mortality and access to care, Malnutrition, and Vaccination coverage). In addition, a data generator from these dictionaries is provided.

Last updated 2 years ago

4.13 score 3 stars 1 packages 5 scripts

sitrep - Report templates and helper functions for applied epidemiology

Report templates and helper functions for applied epidemiology

Last updated 2 years ago

epidemiologymsfoutbreaksreport-generator

4.08 score 40 stars 9 scripts

epitabulate - Tables for Epidemiological Analysis

Produces tables for descriptive epidemiological analysis. These tables describe counts of variables in either line-list or survey data (with appropriate confidence intervals), with additional functionality to calculate odds, risk, and incidence rate ratios directly from a linelist across several variables. This package is part of the 'R4EPIs' project <https://R4epis.netlify.com>.

Last updated 2 years ago

3.38 score 8 stars 1 packages 3 scripts